| Abnormality | Frequent in: |
| Hypospadias/bifid scrotum | Aniridia-Wilms tumor association |
| Deletion of 4p, 11q, 13q | |
| Bladder exstrophy sequence | |
| Fraser syndrome | |
| Fryn syndrome | |
| Smith-Lemli-Opitz syndrome | |
| Triploidy syndrome | |
| Micropenis | Anencephaly sequence |
| Carpenter syndrome | |
| CHARGE association | |
| Deletion of 9p, 18q | |
| 4p duplication syndrome | |
| Noonan syndrome | |
| Prader-Willi syndrome | |
| Cryptorchidism | Aarskog syndrome |
| Carpenter syndrome | |
| Deletion of: 4p, 5p, 9p, 11q, 13q, 18q | |
| Duplication of 3q, 4p, 10q, 15q | |
| Distal arthrogryposis syndrome | |
| Cloacal exstrophy sequence | |
| Fraser syndrome | |
| Freeman-Sheldon syndrome | |
| Miller-Dieker syndrome | |
| Noonan syndrome | |
| Robinow syndrome | |
| Rubinstein-Taybi syndrome | |
| Smith-Lemli-Opitz syndrome | |
| Triploidy syndrome | |
| Trisomy 9 mosaic syndrome | |
| Trisomy 13 | |
| Trisomy 18 | |
| Weaver syndrome | |
| Hypoplasia of labia majora | Deletion of 9p, 18q |
| Prader-Willi syndrome | |
| Robinow syndrome | |
| Trisomy 18 syndrome |
