| Gene symbol | Gene name | Chromosome location | Odds ratio |
| HLA | Major histocompatibility complex | 6p21 | 2.0-4.0 |
| CTLA4 | Cytotoxic T-lymphocyte-associated protein 4 | 2q33 | 1.5-2.2 |
| PTPN22 | Protein tyrosine phosphatase, non-receptor type 22 (lymphoid) | 1p13 | 1.4-1.9 |
| CD40 | CD40 molecule, TNF receptor superfamily member 5 | 20q11 | 1.3-1.8 |
| IL2RA (CD25) | Interleukin 2 receptor, alpha | 10p15 | 1.1-1.4 |
| FCRL3 | Fc receptor-like 3 | 1q23 | 1.1-1.3 |
| TG | Thyroglobulin | 8q24 | 2.0-2.5 |
| TSHR | Thyroid-stimulating hormone receptor | 14q31 | 1.4-2.6 |
